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- Download Chimera (to your personal laptop) from: Chimera
- Optionally, create also an alias, so that Chimera can be opened from a command line, with a ".pdb" file as an argument. If Chimera was installed into /Applications, the alias for the .zshrc file would look like:
alias chimera='/Applications/Chimera.app/Contents/MacOS/chimera'
Part 1
Introduction for task 1:
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- Open the the ligand molecule (nutlin.pdb).
$ chimera nutlin.pdb - Open the command line: Tools→ General Controls → Command Line and type
- distance @H9,H10
This will be the reference distance rRef.
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