Seitenhistorie

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To this end we will use the software CYANA, NMR², and excel (or similar)

CYANA

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Setup 

Please follow the following steps carefully (exact Linux commands are given below; you may copy them to a terminal):

1. Go to your home directory (or data directory).
2. Get the data for the practical from the server (to come data.zip).
3. Unpack the input data for the practical.
4. Get the demo version of CYANA for this practical (or here CYANA webpage)
5. Unpack CYANA.
6. Go to the downloaded CYANA folder
7. Test whether CYANA can be started by typing, './cyana'.
8. Setup the CYANA environment variables.
9. Go to the newly created directory 'data'.
10. Test whether CYANA can be started by typing its name, 'cyana'.
11. Exit from CYANA by typing 'q' or 'quit'.
12. Download Chimera (to your personal laptop) from: Chimera

cd data

cyana
___________________________________________________________________

CYANA 3.98 (mac-intel)

Copyright (c) 2002-17 Peter Guentert. All rights reserved.
___________________________________________________________________

    Demo license valid for specific sequences until 2018-12-31

    Library file "/Users/deans/cyana-3.98/lib/cyana.lib" read, 41 residue types.
*** ERROR: Illegal residue name "LIG".
*** ERROR: Cannot read line 114:
           LIG  333
cyana> q

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Hint: More information on the CYANA commands etc. is in the CYANA 3.0 Reference Manual.

Molecular viewer  

You need also a molecular viewer capable of saving mol2 file

1. Download Chimera (to your personal laptop) from: Chimera

solutions