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To run the FLYA calculation, one could start CYANA and execute the 'CALC.cya' macro from the CYANA prompt, however on a computer with multiple processors it is better to speed up the calculation by running the 'CALC.cya' macro in parallel:
cyana -n 10 CALC.cya
OnThis onestarts CPU10 theindependent commandcalculations simplifyon to10 'cyana CALC.cya'
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processors by using the MPI scheduler (if installed on your system, otherwise shared memory will be used).
It is strongly recommended that you check the MPI scheduler if your calculation is running. If you made a mistake in one of the two macros, the calculation may or may not start, or get interrupted at some point.
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This command allows you to check whether the calculation has generated intermediary files or final results, with a time stamp.
If you have only one CPU you can start the macro with:
cyana CALC.cya
To check the general load on your local computer use:
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